I opened a case with Toyota corporate, they talked to the dealer and researched about it. Finally they admitted some redesign might come in future models but they don’t plan on changing anything. I plan on filling lemon law and getting my vehicle replaced with one that does not have a roof rack...
Update, mild vibration is back. Now it is just noise coming from above. I reposition the rubber pads but still vibrating. Have an appointment at the dealer next Monday.
Took my off the lot, drove it on the highway and though it was going to come apart. After balancing and checking underneath I realized that I may be thinking backwards. Tested and the moment the vibration started I push against the front of the roof rack thru the moonroof. It stopped...